Most of the publications listed here are in text mining and ontology design. I worked on this at Karlsruhe Institute of Technology under René Witte. I owe him much gratitude for letting me get involved in this research as an undergrad and coaching me through my first contributions. My involvement in the publications from 2008 onward was minimal, they build on earlier work I was involved in.
2011-08 N. Naderi, T. Kappler, Ch. J. O. Baker, and R. Witte.
OrganismTagger: Detection, Normalization, and Grounding of Organism
Entities in Biomedical Documents.
Bioinformatics, vol. 27, no. 19, Oxford University Press.
2011-07 Sporleder, C., A. van den Bosch, and K. Zervanou (Eds.), R. Witte, T. Kappler, R. Krestel, and P. C. Lockemann.
Integrating Wiki Systems, Natural Language Processing, and Semantic Technologies for Cultural Heritage Data Management.
Language Technology for Cultural Heritage, Springer Berlin Heidelberg.
2010-02 R. Witte, R. Krestel, T. Kappler, and P. C. Lockemann.
Converting a Historical Architecture Encyclopedia into a Semantic Knowledge Base.
IEEE Intelligent Systems, vol. 25, no. 1.
2009-10 J. Bolleman and T. Kappler.
Weekend Triple Billionaire. [link to PDF of poster]
Semantic Web: Applications and Tools for the Life Sciences 2009, Amsterdam.
2008-06 R. Witte, T. Gitzinger, T. Kappler, and R. Krestel.
Semantic Wiki Approach to Cultural Heritage Data Management.
Language Technology for Cultural Heritage Data (LaTeCH 2008), Marrakech, Morocco.
2007-12 T. Kappler, H. Koziolek, K. Krogmann, and R. Reussner.
Towards Automatic Construction of Reusable Prediction Models for
Component-Based Performance Engineering.
Proc. Software Engineering 2008, ser. LNI, vol. 121.
2007-09 R. Witte, T. Kappler, and Ch. J. O. Baker.
Enhanced Semantic Access to the Protein Engineering Literature using Ontologies
Populated by Text Mining.
International Journal of Bioinformatics Research and Applications (IJBRA), vol. 3, no. 3, 2007.
2006-12 R. Witte, T. Kappler, and Ch. J. O. Baker.
Ontology Design for Biomedical Text Mining.
Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, Springer, 2007.
2005-11 R. Witte, P. Gerlach, M. Joachim, T. Kappler, R. Krestel, and
P. Perera.
Engineering a Semantic Desktop for Building Historians and Architects.
Proceedings of the Semantic Desktop Workshop at the ISWC, volume 175 of
CEUR Workshop Proc., p. 138–152, 2005.